| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Larry Walker Col |
| 2 | 22nd | 2B Chuck Knoblauch NYA |
| 3 | 27th | P Mariano Rivera NYA |
| 4 | 46th | C Javy Lopez Atl |
| 5 | 51st | SS Derek Jeter NYA |
| 6 | 70th | P Jeff Fassero Sea |
| 7 | 75th | OF Todd Helton Col |
| 8 | 94th | DH Chili Davis NYA |
| 9 | 99th | OF Rondell White Mon |
| 10 | 118th | OF Brian L. Hunter Det |
| 11 | 123rd | P Carlos Perez Mon |
| 12 | 142nd | 3B Dean Palmer KC |
| 13 | 147th | P Jaret Wright Cle |
| 14 | 166th | 3B Sean Berry Hou |
| 15 | 171st | P Wilson Alvarez TB |
| 16 | 190th | DH Jose Canseco Tor |
| 17 | 195th | OF Shawn Green Tor |
| 18 | 214th | P Rick Aguilera Min |
| 19 | 219th | C Brad Ausmus Hou |
| 20 | 238th | P Juan Guzman Tor |
| 21 | 243rd | P Jeff Juden Mil |
| 22 | 262nd | P Carl Pavano Mon |
| 23 | 267th | OF Brian McRae NYN |
| 24 | 286th | OF F.P. Santangelo Mon |
| 25 | 291st | SS Orlando Cabrera Mon |
| 26 | 310th | 1B Eduardo Perez Cin |
| 27 | 315th | P Albie Lopez TB |