| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Barry Bonds SF |
| 2 | 19th | 1B Jim Thome Cle |
| 3 | 30th | OF Kenny Lofton Cle |
| 4 | 43rd | 3B Travis Fryman Cle |
| 5 | 54th | C Todd Greene Ana |
| 6 | 67th | P Ricky Bottalico Phi |
| 7 | 78th | P Ugueth Urbina Mon |
| 8 | 91st | P Darryl Kile Col |
| 9 | 102nd | OF Reggie Sanders Cin |
| 10 | 115th | P Andy Benes Ari |
| 11 | 126th | 1B John Jaha Mil |
| 12 | 139th | SS Alex Gonzalez Tor |
| 13 | 150th | C Mike Lieberthal Phi |
| 14 | 163rd | P David Wells NYA |
| 15 | 174th | P Francisco Cordova Pit |
| 16 | 187th | OF Mike Cameron ChA |
| 17 | 198th | 2B Tony Womack Pit |
| 18 | 211th | OF Troy O'Leary Bos |
| 19 | 222nd | P Willie Blair Ari |
| 20 | 235th | 3B Tim Naehring Bos |
| 21 | 246th | P Cal Eldred Mil |
| 22 | 259th | P Hector Carrasco Min |
| 23 | 270th | P Sterling Hitchcock SD |
| 24 | 283rd | 2B Fernando Vina Mil |
| 25 | 294th | OF Stan Javier SF |
| 26 | 307th | SS Kevin Stocker TB |
| 27 | 318th | C Chris Widger Mon |