| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | 1B Andres Galarraga Atl |
| 3 | 25th | 1B Tino Martinez NYA |
| 4 | 48th | OF Ray Lankford StL |
| 5 | 49th | P Andy Pettitte NYA |
| 6 | 72nd | OF Brady Anderson Bal |
| 7 | 73rd | P Pat Hentgen Tor |
| 8 | 96th | P Matt Morris StL |
| 9 | 97th | P Scott Erickson Bal |
| 10 | 120th | SS Neifi Perez Col |
| 11 | 121st | 2B Delino DeShields StL |
| 12 | 144th | 3B Willie Greene Cin |
| 13 | 145th | P Mike Hampton Hou |
| 14 | 168th | OF Jason Giambi Oak |
| 15 | 169th | OF Henry Rodriguez ChN |
| 16 | 192nd | C Darrin Fletcher Tor |
| 17 | 193rd | 2B Joey Cora Sea |
| 18 | 216th | P John Burkett Tex |
| 19 | 217th | P Darren Oliver Tex |
| 20 | 240th | C Jeff Reed Col |
| 21 | 241st | P Kevin Tapani ChN |
| 22 | 264th | P Scott Karl Mil |
| 23 | 265th | P Pete Harnisch Cin |
| 24 | 288th | SS Jose Vizcaino LA |
| 25 | 289th | OF Jason McDonald Oak |
| 26 | 312th | P Scott Kamieniecki Bal |
| 27 | 313th | 3B Charlie Hayes SF |