| Round | Overall | Player |
|---|---|---|
| 1 | 10th | P Pedro Martinez Bos |
| 2 | 15th | P Greg Maddux Atl |
| 3 | 34th | OF Ellis Burks Col |
| 4 | 39th | 3B Ken Caminiti SD |
| 5 | 58th | P David Cone NYA |
| 6 | 63rd | P Chan Ho Park LA |
| 7 | 82nd | OF Paul O'Neill NYA |
| 8 | 87th | OF Ben Grieve Oak |
| 9 | 106th | 2B Damion Easley Det |
| 10 | 111th | P Armando Benitez Bal |
| 11 | 130th | OF Jeromy Burnitz Mil |
| 12 | 135th | P Brett Tomko Cin |
| 13 | 154th | P Victor Santos Det |
| 14 | 159th | C Todd Hundley NYN |
| 15 | 178th | P Matt Karchner ChA |
| 16 | 183rd | 1B David Segui Sea |
| 17 | 202nd | OF Eric Davis Bal |
| 18 | 207th | 3B Jeff Cirillo Mil |
| 19 | 226th | 1B Lee Stevens Tex |
| 20 | 231st | SS Kevin Elster Tex |
| 21 | 250th | C Eddie Taubensee Cin |
| 22 | 255th | P Darren Dreifort LA |
| 23 | 274th | P Kerry Wood ChN |
| 24 | 279th | P Kevin Millwood Atl |
| 25 | 298th | SS Pokey Reese Cin |
| 26 | 303rd | OF Karim Garcia Ari |
| 27 | 322nd | 2B Mark McLemore Tex |