| Round | Overall | Player |
|---|---|---|
| 1 | 9th | DH Juan Gonzalez Tex |
| 2 | 16th | P Roger Clemens Tor |
| 3 | 33rd | 1B Rafael Palmeiro Bal |
| 4 | 40th | P Trevor Hoffman SD |
| 5 | 57th | P Randy Myers Tor |
| 6 | 64th | OF Moises Alou Hou |
| 7 | 81st | 3B Robin Ventura ChA |
| 8 | 88th | OF Rusty Greer Tex |
| 9 | 105th | 1B J.T. Snow SF |
| 10 | 112th | P Hideo Nomo LA |
| 11 | 129th | SS Royce Clayton StL |
| 12 | 136th | OF Ryan Klesko Atl |
| 13 | 153rd | P Bobby J. Jones NYN |
| 14 | 160th | C Jim Leyritz Bos |
| 15 | 177th | 3B Russ Davis Sea |
| 16 | 184th | P Al Leiter NYN |
| 17 | 201st | OF Geronimo Berroa Cle |
| 18 | 208th | 2B Scott Spiezio Oak |
| 19 | 225th | P Tom Gordon Bos |
| 20 | 232nd | C Chris Hoiles Bal |
| 21 | 249th | 1B Travis Lee Ari |
| 22 | 256th | 2B Miguel Cairo TB |
| 23 | 273rd | OF Jeffrey Hammonds Bal |
| 24 | 280th | SS Miguel Tejada Oak |
| 25 | 297th | 1B Dave Nilsson Mil |
| 26 | 304th | P Bret Saberhagen Bos |
| 27 | 321st | P Arthur Rhodes Bal |