| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Craig Biggio Hou |
| 2 | 13th | DH Juan Gonzalez Tex |
| 3 | 36th | P Mariano Rivera NYA |
| 4 | 37th | 1B Rafael Palmeiro Bal |
| 5 | 60th | 3B Scott Rolen Phi |
| 6 | 61st | P Curt Schilling Phi |
| 7 | 84th | P John Smoltz Atl |
| 8 | 85th | P Robb Nen SF |
| 9 | 108th | OF Moises Alou Hou |
| 10 | 109th | P David Wells NYA |
| 11 | 132nd | 1B J.T. Snow SF |
| 12 | 133rd | P Darryl Kile Col |
| 13 | 156th | C Dan Wilson Sea |
| 14 | 157th | SS Kevin Elster Tex |
| 15 | 180th | OF Marquis Grissom Mil |
| 16 | 181st | P Joey Hamilton SD |
| 17 | 204th | 1B Jeff King KC |
| 18 | 205th | 3B Jeff Cirillo Mil |
| 19 | 228th | C Brian Johnson SF |
| 20 | 229th | 3B Joe Randa Det |
| 21 | 252nd | P John Burkett Tex |
| 22 | 253rd | OF Michael Tucker Atl |
| 23 | 276th | P Tim Wakefield Bos |
| 24 | 277th | OF Devon White Ari |
| 25 | 300th | P Cal Eldred Mil |
| 26 | 301st | 2B Carlos Baerga NYN |
| 27 | 324th | OF Jose Guillen Pit |