| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | SS Derek Jeter NYA |
| 3 | 25th | OF Bernie Williams NYA |
| 4 | 48th | P Mike Mussina Bal |
| 5 | 49th | P Trevor Hoffman SD |
| 6 | 72nd | 2B Damion Easley Det |
| 7 | 73rd | 1B Darin Erstad Ana |
| 8 | 96th | P Brad Radke Min |
| 9 | 97th | P Justin Thompson Det |
| 10 | 120th | C Darrin Fletcher Tor |
| 11 | 121st | OF Bernard Gilkey NYN |
| 12 | 144th | 3B Dave Hollins Ana |
| 13 | 145th | P Doug Jones Mil |
| 14 | 168th | OF Brian Jordan StL |
| 15 | 169th | P Jimmy Key Bal |
| 16 | 192nd | OF Al Martin Pit |
| 17 | 193rd | OF Eric Davis Bal |
| 18 | 216th | SS Shawon Dunston Cle |
| 19 | 217th | 3B Scott Brosius NYA |
| 20 | 240th | 1B Eduardo Perez Cin |
| 21 | 241st | P Bob Tewksbury Min |
| 22 | 264th | C Tim Spehr NYN |
| 23 | 265th | P Derek Lowe Bos |
| 24 | 288th | P Jason Schmidt Pit |
| 25 | 289th | P Kerry Wood ChN |
| 26 | 312th | C Todd Hundley NYN |
| 27 | 313th | DH Mike Stanley Tor |