| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Frank Thomas ChA |
| 2 | 22nd | C Ivan Rodriguez Tex |
| 3 | 27th | P Pedro Martinez Bos |
| 4 | 46th | OF Raul Mondesi LA |
| 5 | 51st | OF Tim Salmon Ana |
| 6 | 70th | P Randy Myers Tor |
| 7 | 75th | OF Vladimir Guerrero Mon |
| 8 | 94th | 2B Eric Young LA |
| 9 | 99th | P Shawn Estes SF |
| 10 | 118th | 3B Bobby Bonilla Fla |
| 11 | 123rd | SS Edgar Renteria Fla |
| 12 | 142nd | P Jaret Wright Cle |
| 13 | 147th | P Ugueth Urbina Mon |
| 14 | 166th | OF Rondell White Mon |
| 15 | 171st | P Shane Reynolds Hou |
| 16 | 190th | OF Lance Johnson ChN |
| 17 | 195th | OF Garret Anderson Ana |
| 18 | 214th | P Geremi Gonzalez ChN |
| 19 | 219th | SS Jeff Blauser ChN |
| 20 | 238th | 1B Jeff Conine KC |
| 21 | 243rd | 3B Kevin Orie ChN |
| 22 | 262nd | P Jerry Dipoto Col |
| 23 | 267th | 2B Fernando Vina Mil |
| 24 | 286th | OF Shannon Stewart Tor |
| 25 | 291st | C John Flaherty TB |
| 26 | 310th | P Steve Trachsel ChN |
| 27 | 315th | OF Glenallen Hill Sea |