| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Mark McGwire StL |
| 2 | 16th | 2B Chuck Knoblauch NYA |
| 3 | 33rd | OF Manny Ramirez Cle |
| 4 | 40th | P Pete Smith SD |
| 5 | 57th | 3B Robin Ventura ChA |
| 6 | 64th | P David Cone NYA |
| 7 | 81st | P Pat Hentgen Tor |
| 8 | 88th | SS Jose Valentin Mil |
| 9 | 105th | 1B John Jaha Mil |
| 10 | 112th | P Matt Morris StL |
| 11 | 129th | DH Chili Davis NYA |
| 12 | 136th | P John Franco NYN |
| 13 | 153rd | OF Ron Gant StL |
| 14 | 160th | 3B Todd Walker Min |
| 15 | 177th | P Rick Reed NYN |
| 16 | 184th | OF Matt Stairs Oak |
| 17 | 201st | P Livan Hernandez Fla |
| 18 | 208th | C Chris Hoiles Bal |
| 19 | 225th | P Chris Holt Hou |
| 20 | 232nd | P Brett Tomko Cin |
| 21 | 249th | OF Brian S. Giles Cle |
| 22 | 256th | P Butch Henry Bos |
| 23 | 273rd | P Chad Ogea Cle |
| 24 | 280th | C Scott Hatteberg Bos |
| 25 | 297th | OF Luis Gonzalez Det |
| 26 | 304th | P Donovan Osborne StL |
| 27 | 321st | DH Harold Baines Bal |