| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B Chipper Jones Atl |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | P Trevor Hoffman SD |
| 4 | 37th | 1B Rafael Palmeiro Bal |
| 5 | 60th | SS Mark Grudzielanek Mon |
| 6 | 61st | C Jason Kendall Pit |
| 7 | 84th | OF Jose Cruz Jr Tor |
| 8 | 85th | P Mark Wohlers Atl |
| 9 | 108th | OF Reggie Sanders Cin |
| 10 | 109th | P Randy Myers Tor |
| 11 | 132nd | P Ricky Bottalico Phi |
| 12 | 133rd | OF Garret Anderson Ana |
| 13 | 156th | P David Wells NYA |
| 14 | 157th | OF Derek Bell Hou |
| 15 | 180th | 1B Mark Grace ChN |
| 16 | 181st | 2B Joey Cora Sea |
| 17 | 204th | 3B Russ Davis Sea |
| 18 | 205th | 1B Kevin Young Pit |
| 19 | 228th | P Geremi Gonzalez ChN |
| 20 | 229th | P Darren Dreifort LA |
| 21 | 252nd | SS Pat Meares Min |
| 22 | 253rd | C Brian Johnson SF |
| 23 | 276th | OF Jose Guillen Pit |
| 24 | 277th | OF Cliff Floyd Fla |
| 25 | 300th | P Doug Drabek Bal |
| 26 | 301st | P Aaron Sele Tex |
| 27 | 324th | P Chris Holt Hou |