| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Jeff Bagwell Hou |
| 2 | 19th | 3B Vinny Castilla Col |
| 3 | 30th | SS Derek Jeter NYA |
| 4 | 43rd | P Andy Pettitte NYA |
| 5 | 54th | OF Tony Gwynn SD |
| 6 | 67th | 3B Scott Rolen Phi |
| 7 | 78th | P Pat Hentgen Tor |
| 8 | 91st | P Armando Benitez Bal |
| 9 | 102nd | OF Bob Higginson Det |
| 10 | 115th | OF Steve Finley SD |
| 11 | 126th | 2B Ray Durham ChA |
| 12 | 139th | OF Brian Jordan StL |
| 13 | 150th | C Darrin Fletcher Tor |
| 14 | 163rd | OF Jeromy Burnitz Mil |
| 15 | 174th | P Mike Hampton Hou |
| 16 | 187th | P Francisco Cordova Pit |
| 17 | 198th | 3B Scott Brosius NYA |
| 18 | 211th | DH Paul Molitor Min |
| 19 | 222nd | OF Lance Johnson ChN |
| 20 | 235th | P Matt Karchner ChA |
| 21 | 246th | OF Michael Tucker Atl |
| 22 | 259th | C Jim Leyritz Bos |
| 23 | 270th | P Jeff D'Amico Mil |
| 24 | 283rd | P Scott Kamieniecki Bal |
| 25 | 294th | OF Gregg Jefferies Phi |
| 26 | 307th | P Orel Hershiser SF |
| 27 | 318th | P Oscar Henriquez Fla |