| Round | Overall | Player |
|---|---|---|
| 1 | 10th | P Greg Maddux Atl |
| 2 | 15th | 2B Chuck Knoblauch NYA |
| 3 | 34th | P Tom Glavine Atl |
| 4 | 39th | 1B Tony Clark Det |
| 5 | 58th | OF Dante Bichette Col |
| 6 | 63rd | OF Rusty Greer Tex |
| 7 | 82nd | 3B Edgardo Alfonzo NYN |
| 8 | 87th | SS Jay Bell Ari |
| 9 | 106th | P Billy Wagner Hou |
| 10 | 111th | 1B John Olerud NYN |
| 11 | 130th | OF Vladimir Guerrero Mon |
| 12 | 135th | P Kevin Millwood Atl |
| 13 | 154th | 3B Adrian Beltre LA |
| 14 | 159th | C Brad Ausmus Hou |
| 15 | 178th | P Todd Jones Det |
| 16 | 183rd | P John Franco NYN |
| 17 | 202nd | P Ben McDonald Cle |
| 18 | 207th | P Tom Gordon Bos |
| 19 | 226th | P Chuck Finley Ana |
| 20 | 231st | C Jeff Reed Col |
| 21 | 250th | P Felix Rodriguez Ari |
| 22 | 255th | C Kevin L. Brown Tor |
| 23 | 274th | OF Quinton McCracken TB |
| 24 | 279th | OF Rickey Henderson Oak |
| 25 | 298th | P Bobby Witt Tex |
| 26 | 303rd | 2B Tony Graffanino Atl |
| 27 | 322nd | DH Cecil Fielder Ana |