| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Mike Piazza LA |
| 2 | 23rd | 2B Delino DeShields StL |
| 3 | 26th | 3B Matt Williams Ari |
| 4 | 47th | P Shawn Estes SF |
| 5 | 50th | P Chan Ho Park LA |
| 6 | 71st | OF Moises Alou Hou |
| 7 | 74th | P Justin Thompson Det |
| 8 | 95th | P Robb Nen SF |
| 9 | 98th | SS Rey Ordonez NYN |
| 10 | 119th | OF Tom Goodwin Tex |
| 11 | 122nd | OF Johnny Damon KC |
| 12 | 143rd | P John Rocker Atl |
| 13 | 146th | OF Al Martin Pit |
| 14 | 167th | OF Mike Cameron ChA |
| 15 | 170th | P Brett Tomko Cin |
| 16 | 191st | 1B John Jaha Mil |
| 17 | 194th | 2B Carlos Baerga NYN |
| 18 | 215th | SS Miguel Tejada Oak |
| 19 | 218th | P Jeff Fassero Sea |
| 20 | 239th | P Kirk Rueter SF |
| 21 | 242nd | OF Otis Nixon Min |
| 22 | 263rd | DH Mike Stanley Tor |
| 23 | 266th | P Doug Jones Mil |
| 24 | 287th | 3B Wade Boggs TB |
| 25 | 290th | P Sterling Hitchcock SD |
| 26 | 311th | OF Jermaine Dye KC |
| 27 | 314th | C Eli Marrero StL |