| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Alex Rodriguez Sea |
| 2 | 19th | P Mariano Rivera NYA |
| 3 | 30th | 1B Andres Galarraga Atl |
| 4 | 43rd | 2B Roberto Alomar Bal |
| 5 | 54th | P David Cone NYA |
| 6 | 67th | P Mark Wohlers Atl |
| 7 | 78th | P Chan Ho Park LA |
| 8 | 91st | OF Brady Anderson Bal |
| 9 | 102nd | OF Steve Finley SD |
| 10 | 115th | P John Franco NYN |
| 11 | 126th | 3B Edgardo Alfonzo NYN |
| 12 | 139th | OF Bernard Gilkey NYN |
| 13 | 150th | C Mike Lieberthal Phi |
| 14 | 163rd | OF Andruw Jones Atl |
| 15 | 174th | P Ricky Bottalico Phi |
| 16 | 187th | P Brett Tomko Cin |
| 17 | 198th | P Rich Loiselle Pit |
| 18 | 211th | 1B Mark Grace ChN |
| 19 | 222nd | OF Lance Johnson ChN |
| 20 | 235th | C Brad Ausmus Hou |
| 21 | 246th | 3B Ed Sprague Tor |
| 22 | 259th | 1B Carlos Delgado Tor |
| 23 | 270th | P Hideki Irabu NYA |
| 24 | 283rd | P Bret Saberhagen Bos |
| 25 | 294th | P Jay Powell Fla |
| 26 | 307th | OF Johnny Damon KC |
| 27 | 318th | 2B Bret Boone Cin |