| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Mark McGwire StL |
| 2 | 16th | SS Nomar Garciaparra Bos |
| 3 | 33rd | OF Dante Bichette Col |
| 4 | 40th | P Andy Pettitte NYA |
| 5 | 57th | 3B Robin Ventura ChA |
| 6 | 64th | 1B Tony Clark Det |
| 7 | 81st | P Robb Nen SF |
| 8 | 88th | P Ismael Valdez LA |
| 9 | 105th | P Billy Wagner Hou |
| 10 | 112th | OF Jose Cruz Jr Tor |
| 11 | 129th | P Jose Mesa Cle |
| 12 | 136th | C Charles Johnson Fla |
| 13 | 153rd | P Jeff Brantley StL |
| 14 | 160th | OF Brian Jordan StL |
| 15 | 177th | 3B Cal Ripken Bal |
| 16 | 184th | P Matt Karchner ChA |
| 17 | 201st | OF Marty Cordova Min |
| 18 | 208th | 2B Scott Spiezio Oak |
| 19 | 225th | P Heathcliff Slocumb Sea |
| 20 | 232nd | 1B Paul Sorrento TB |
| 21 | 249th | OF Matt Stairs Oak |
| 22 | 256th | P Al Leiter NYN |
| 23 | 273rd | 2B Fernando Vina Mil |
| 24 | 280th | 1B Dave Nilsson Mil |
| 25 | 297th | P Geremi Gonzalez ChN |
| 26 | 304th | 3B Scott Brosius NYA |
| 27 | 321st | C Jason Varitek Bos |