| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Jeff Bagwell Hou |
| 2 | 20th | 2B Chuck Knoblauch NYA |
| 3 | 29th | P Kevin Brown SD |
| 4 | 44th | OF Kenny Lofton Cle |
| 5 | 53rd | P Randy Myers Tor |
| 6 | 68th | OF Tony Gwynn SD |
| 7 | 77th | OF Ellis Burks Col |
| 8 | 92nd | P Andy Benes Ari |
| 9 | 101st | SS Jay Bell Ari |
| 10 | 116th | P Alan Benes StL |
| 11 | 125th | 3B Dean Palmer KC |
| 12 | 140th | OF Ron Gant StL |
| 13 | 149th | P Rick Reed NYN |
| 14 | 164th | OF Ryan Klesko Atl |
| 15 | 173rd | 1B Jeff King KC |
| 16 | 188th | 3B Sean Berry Hou |
| 17 | 197th | SS Edgar Renteria Fla |
| 18 | 212th | C Darrin Fletcher Tor |
| 19 | 221st | P Juan Guzman Tor |
| 20 | 236th | C Eddie Taubensee Cin |
| 21 | 245th | P Aaron Sele Tex |
| 22 | 260th | C Mike Sweeney KC |
| 23 | 269th | P Jack McDowell Ana |
| 24 | 284th | P Pete Harnisch Cin |
| 25 | 293rd | P Tyler Green Phi |
| 26 | 308th | OF Luis Gonzalez Det |
| 27 | 317th | P Felix Rodriguez Ari |