| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Frank Thomas ChA |
| 2 | 22nd | 3B Vinny Castilla Col |
| 3 | 27th | OF Raul Mondesi LA |
| 4 | 46th | P John Wetteland Tex |
| 5 | 51st | DH Edgar Martinez Sea |
| 6 | 70th | OF Bob Higginson Det |
| 7 | 75th | OF Jeromy Burnitz Mil |
| 8 | 94th | P Shane Reynolds Hou |
| 9 | 99th | P John Burkett Tex |
| 10 | 118th | P Jaime Navarro ChA |
| 11 | 123rd | P Kenny Rogers Oak |
| 12 | 142nd | SS Kevin Elster Tex |
| 13 | 147th | 2B Ray Durham ChA |
| 14 | 166th | C Jeff Reed Col |
| 15 | 171st | P Victor Santos Det |
| 16 | 190th | 3B Willie Greene Cin |
| 17 | 195th | OF Shawn Green Tor |
| 18 | 214th | OF Jason Giambi Oak |
| 19 | 219th | P Cal Eldred Mil |
| 20 | 238th | 2B Quilvio Veras SD |
| 21 | 243rd | OF Karim Garcia Ari |
| 22 | 262nd | P Steve Trachsel ChN |
| 23 | 267th | P Bobby Witt Tex |
| 24 | 286th | P Jon Lieber Pit |
| 25 | 291st | P Dwight Gooden Cle |
| 26 | 310th | P Kerry Wood ChN |
| 27 | 315th | P Jim Parque ChA |