| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | 3B Chipper Jones Atl |
| 3 | 25th | OF Bernie Williams NYA |
| 4 | 48th | P Tom Glavine Atl |
| 5 | 49th | C Javy Lopez Atl |
| 6 | 72nd | 2B Delino DeShields StL |
| 7 | 73rd | OF Paul O'Neill NYA |
| 8 | 96th | P Chuck Finley Ana |
| 9 | 97th | 1B Darin Erstad Ana |
| 10 | 120th | P Andy Ashby SD |
| 11 | 121st | 1B Fred McGriff TB |
| 12 | 144th | OF Garret Anderson Ana |
| 13 | 145th | SS Omar Vizquel Cle |
| 14 | 168th | P Doug Jones Mil |
| 15 | 169th | 3B Dave Hollins Ana |
| 16 | 192nd | P Dustin Hermanson Mon |
| 17 | 193rd | 1B Travis Lee Ari |
| 18 | 216th | P Ken Hill Ana |
| 19 | 217th | 2B Carlos Baerga NYN |
| 20 | 240th | OF Glenallen Hill Sea |
| 21 | 241st | SS Walt Weiss Atl |
| 22 | 264th | OF Troy O'Leary Bos |
| 23 | 265th | P Jason Bere ChA |
| 24 | 288th | C Joe Girardi NYA |
| 25 | 289th | OF Gregg Jefferies Phi |
| 26 | 312th | P Brian Rose Bos |
| 27 | 313th | DH Reggie Jefferson Bos |