| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Larry Walker Col |
| 2 | 21st | P Pedro Martinez Bos |
| 3 | 28th | 2B Mike Lansing Col |
| 4 | 45th | 3B Travis Fryman Cle |
| 5 | 52nd | SS Derek Jeter NYA |
| 6 | 69th | OF Moises Alou Hou |
| 7 | 76th | C Jason Kendall Pit |
| 8 | 93rd | OF Rondell White Mon |
| 9 | 100th | P Brad Radke Min |
| 10 | 117th | DH Chili Davis NYA |
| 11 | 124th | OF Todd Helton Col |
| 12 | 141st | SS Mark Grudzielanek Mon |
| 13 | 148th | DH Jose Canseco Tor |
| 14 | 165th | P Kevin Appier KC |
| 15 | 172nd | P Ugueth Urbina Mon |
| 16 | 189th | P Wilson Alvarez TB |
| 17 | 196th | P John Rocker Atl |
| 18 | 213th | OF Greg Vaughn SD |
| 19 | 220th | P David Wells NYA |
| 20 | 237th | P Rick Aguilera Min |
| 21 | 244th | C Chris Widger Mon |
| 22 | 261st | 3B Joe Randa Det |
| 23 | 268th | P Jeff Juden Mil |
| 24 | 285th | OF Brian McRae NYN |
| 25 | 292nd | P Carl Pavano Mon |
| 26 | 309th | P Ramiro Mendoza NYA |
| 27 | 316th | OF F.P. Santangelo Mon |