| Round | Overall | Player |
|---|---|---|
| 1 | 11th | P Greg Maddux Atl |
| 2 | 14th | P Mike Mussina Bal |
| 3 | 35th | P Mariano Rivera NYA |
| 4 | 38th | P Andy Pettitte NYA |
| 5 | 59th | OF Ray Lankford StL |
| 6 | 62nd | 2B Delino DeShields StL |
| 7 | 83rd | SS Barry Larkin Cin |
| 8 | 86th | 3B Jeff Cirillo Mil |
| 9 | 107th | OF Reggie Sanders Cin |
| 10 | 110th | P Armando Benitez Bal |
| 11 | 131st | 1B J.T. Snow SF |
| 12 | 134th | C Jason Kendall Pit |
| 13 | 155th | OF Ron Gant StL |
| 14 | 158th | OF Henry Rodriguez ChN |
| 15 | 179th | P Kirk Rueter SF |
| 16 | 182nd | P Francisco Cordova Pit |
| 17 | 203rd | DH Cecil Fielder Ana |
| 18 | 206th | P Geremi Gonzalez ChN |
| 19 | 227th | C Jim Leyritz Bos |
| 20 | 230th | P Willie Blair Ari |
| 21 | 251st | OF Brian McRae NYN |
| 22 | 254th | OF Greg Vaughn SD |
| 23 | 275th | SS Kevin Stocker TB |
| 24 | 278th | OF Todd Hollandsworth LA |
| 25 | 299th | 1B Paul Sorrento TB |
| 26 | 302nd | P Tony Saunders TB |
| 27 | 323rd | P Shigetoshi Hasegawa Ana |