| Round | Overall | Player |
|---|---|---|
| 1 | 12th | P Pedro Martinez Bos |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | 1B Rafael Palmeiro Bal |
| 4 | 37th | 3B Ken Caminiti SD |
| 5 | 60th | OF Ben Grieve Oak |
| 6 | 61st | OF Brady Anderson Bal |
| 7 | 84th | P Justin Thompson Det |
| 8 | 85th | P Rod Beck ChN |
| 9 | 108th | P Shane Reynolds Hou |
| 10 | 109th | OF Paul O'Neill NYA |
| 11 | 132nd | P Matt Karchner ChA |
| 12 | 133rd | C Chris Hoiles Bal |
| 13 | 156th | P Heathcliff Slocumb Sea |
| 14 | 157th | SS Royce Clayton StL |
| 15 | 180th | P Livan Hernandez Fla |
| 16 | 181st | OF Michael Tucker Atl |
| 17 | 204th | OF Brian Jordan StL |
| 18 | 205th | P Tim Belcher KC |
| 19 | 228th | 1B Will Clark Tex |
| 20 | 229th | P Kelvim Escobar Tor |
| 21 | 252nd | P Kenny Rogers Oak |
| 22 | 253rd | OF Wil Cordero Bos |
| 23 | 276th | C Tom Pagnozzi StL |
| 24 | 277th | 3B Joe Randa Det |
| 25 | 300th | P Kevin Millwood Atl |
| 26 | 301st | P Scott Sanders Det |
| 27 | 324th | OF Jermaine Dye KC |