| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | C Mike Piazza LA |
| 2 | 22nd | 2B Mike Lansing Col |
| 3 | 27th | OF Dante Bichette Col |
| 4 | 46th | OF Tim Salmon Ana |
| 5 | 51st | OF Ellis Burks Col |
| 6 | 70th | P Darryl Kile Col |
| 7 | 75th | P Ramon Martinez LA |
| 8 | 94th | SS Jay Bell Ari |
| 9 | 99th | P Pedro Astacio Col |
| 10 | 118th | OF Todd Helton Col |
| 11 | 123rd | OF Vladimir Guerrero Mon |
| 12 | 142nd | P Todd Stottlemyre StL |
| 13 | 147th | P Jamie Moyer Sea |
| 14 | 166th | P Alan Benes StL |
| 15 | 171st | 3B Willie Greene Cin |
| 16 | 190th | C Todd Greene Ana |
| 17 | 195th | 1B David Segui Sea |
| 18 | 214th | P Dave Burba Cle |
| 19 | 219th | P Mike Fetters Oak |
| 20 | 238th | OF Jose Guillen Pit |
| 21 | 243rd | 3B Sean Berry Hou |
| 22 | 262nd | P Jose Rosado KC |
| 23 | 267th | P John Rocker Atl |
| 24 | 286th | P John Thomson Col |
| 25 | 291st | P Jeff Suppan Ari |
| 26 | 310th | C Mike Sweeney KC |
| 27 | 315th | 3B Fernando Tatis Tex |