| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Larry Walker Col |
| 2 | 21st | 1B Mark McGwire StL |
| 3 | 28th | P Roger Clemens Tor |
| 4 | 45th | 3B Matt Williams Ari |
| 5 | 52nd | OF Raul Mondesi LA |
| 6 | 69th | 2B Jeff Kent SF |
| 7 | 76th | C Javy Lopez Atl |
| 8 | 93rd | P Shawn Estes SF |
| 9 | 100th | P Jeff Shaw Cin |
| 10 | 117th | 3B Dean Palmer KC |
| 11 | 124th | P Antonio Osuna LA |
| 12 | 141st | OF Matt Stairs Oak |
| 13 | 148th | P David Wells NYA |
| 14 | 165th | P Rick Reed NYN |
| 15 | 172nd | SS Kevin Elster Tex |
| 16 | 189th | OF Butch Huskey NYN |
| 17 | 196th | P Rick Aguilera Min |
| 18 | 213th | P Jaime Navarro ChA |
| 19 | 220th | 1B John Jaha Mil |
| 20 | 237th | 1B Lee Stevens Tex |
| 21 | 244th | C Brian Johnson SF |
| 22 | 261st | P Brian Rose Bos |
| 23 | 268th | OF Tom Goodwin Tex |
| 24 | 285th | SS Jeff Blauser ChN |
| 25 | 292nd | P Mark Gardner SF |
| 26 | 309th | 2B Quilvio Veras SD |
| 27 | 316th | P Mark Thompson Col |