| Round | Overall | Player |
|---|---|---|
| 1 | 10th | DH Juan Gonzalez Tex |
| 2 | 15th | 2B Chuck Knoblauch NYA |
| 3 | 34th | 1B Tino Martinez NYA |
| 4 | 39th | P Tom Glavine Atl |
| 5 | 58th | P David Cone NYA |
| 6 | 63rd | C Sandy Alomar Jr. Cle |
| 7 | 82nd | OF Tony Gwynn SD |
| 8 | 87th | SS Omar Vizquel Cle |
| 9 | 106th | P Mark Langston SD |
| 10 | 111th | 3B Dave Hollins Ana |
| 11 | 130th | P Juan Guzman Tor |
| 12 | 135th | DH Chili Davis NYA |
| 13 | 154th | P Todd Worrell LA |
| 14 | 159th | OF Jeromy Burnitz Mil |
| 15 | 178th | OF Brian L. Hunter Det |
| 16 | 183rd | 3B Todd Zeile LA |
| 17 | 202nd | P Kevin Ritz Col |
| 18 | 207th | C Darrin Fletcher Tor |
| 19 | 226th | P Kent Mercker StL |
| 20 | 231st | OF Garret Anderson Ana |
| 21 | 250th | P Tom Candiotti Oak |
| 22 | 255th | DH Darryl Strawberry NYA |
| 23 | 274th | P Dwight Gooden Cle |
| 24 | 279th | P Ramon Garcia Hou |
| 25 | 298th | P Chris Holt Hou |
| 26 | 303rd | 3B Tim Naehring Bos |
| 27 | 322nd | P Orel Hershiser SF |