| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | P Greg Maddux Atl |
| 3 | 25th | 1B Rafael Palmeiro Bal |
| 4 | 48th | 3B Robin Ventura ChA |
| 5 | 49th | P Roger Clemens Tor |
| 6 | 72nd | P Jeff Shaw Cin |
| 7 | 73rd | OF Brady Anderson Bal |
| 8 | 96th | SS Neifi Perez Col |
| 9 | 97th | P Andy Benes Ari |
| 10 | 120th | OF Ryan Klesko Atl |
| 11 | 121st | P Ugueth Urbina Mon |
| 12 | 144th | 3B Todd Walker Min |
| 13 | 145th | OF Todd Helton Col |
| 14 | 168th | P Carlos Perez Mon |
| 15 | 169th | P Ken Hill Ana |
| 16 | 192nd | C Jorge Fabregas Ari |
| 17 | 193rd | OF Butch Huskey NYN |
| 18 | 216th | P Darren Dreifort LA |
| 19 | 217th | 1B Travis Lee Ari |
| 20 | 240th | C Brad Ausmus Hou |
| 21 | 241st | OF Magglio Ordonez ChA |
| 22 | 264th | 3B Fernando Tatis Tex |
| 23 | 265th | P Kevin Millwood Atl |
| 24 | 288th | DH Cecil Fielder Ana |
| 25 | 289th | P Jerry Dipoto Col |
| 26 | 312th | P Jeff Juden Mil |
| 27 | 313th | C Jim Leyritz Bos |