| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Frank Thomas ChA |
| 2 | 17th | OF Bernie Williams NYA |
| 3 | 32nd | OF Jay Buhner Sea |
| 4 | 41st | SS Derek Jeter NYA |
| 5 | 56th | P Randy Myers Tor |
| 6 | 65th | P Billy Wagner Hou |
| 7 | 80th | P Todd Jones Det |
| 8 | 89th | OF Moises Alou Hou |
| 9 | 104th | 2B Delino DeShields StL |
| 10 | 113th | 3B Willie Greene Cin |
| 11 | 128th | C Charles Johnson Fla |
| 12 | 137th | P Rich Loiselle Pit |
| 13 | 152nd | P Shane Reynolds Hou |
| 14 | 161st | P Wilson Alvarez TB |
| 15 | 176th | P Dustin Hermanson Mon |
| 16 | 185th | P Darren Oliver Tex |
| 17 | 200th | P Jose Rosado KC |
| 18 | 209th | P Jack McDowell Ana |
| 19 | 224th | P Aaron Sele Tex |
| 20 | 233rd | P Scott Karl Mil |
| 21 | 248th | 3B Ed Sprague Tor |
| 22 | 257th | C Mike Sweeney KC |
| 23 | 272nd | OF Karim Garcia Ari |
| 24 | 281st | DH Reggie Jefferson Bos |
| 25 | 296th | P Mike Grace Phi |
| 26 | 305th | P Rick Helling Tex |
| 27 | 320th | P Bret Saberhagen Bos |