| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Mark McGwire StL |
| 2 | 16th | 2B Chuck Knoblauch NYA |
| 3 | 33rd | 3B Matt Williams Ari |
| 4 | 40th | OF Paul O'Neill NYA |
| 5 | 57th | P Denny Neagle Atl |
| 6 | 64th | C Sandy Alomar Jr. Cle |
| 7 | 81st | OF Tony Gwynn SD |
| 8 | 88th | 2B John Valentin Bos |
| 9 | 105th | OF Ron Gant StL |
| 10 | 112th | OF Henry Rodriguez ChN |
| 11 | 129th | P Jimmy Key Bal |
| 12 | 136th | SS Jeff Blauser ChN |
| 13 | 153rd | DH Chili Davis NYA |
| 14 | 160th | P Jamie Moyer Sea |
| 15 | 177th | 1B Jeff King KC |
| 16 | 184th | P Al Leiter NYN |
| 17 | 201st | P Tim Wakefield Bos |
| 18 | 208th | P Bob Tewksbury Min |
| 19 | 225th | P Dave Burba Cle |
| 20 | 232nd | P Tom Candiotti Oak |
| 21 | 249th | P Kenny Rogers Oak |
| 22 | 256th | C Darrin Fletcher Tor |
| 23 | 273rd | 1B Lee Stevens Tex |
| 24 | 280th | P Brian Moehler Det |
| 25 | 297th | P Bobby Witt Tex |
| 26 | 304th | OF Jon Nunnally Cin |
| 27 | 321st | P Scott Kamieniecki Bal |