| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Alex Rodriguez Sea |
| 2 | 19th | C Ivan Rodriguez Tex |
| 3 | 30th | 3B Ken Caminiti SD |
| 4 | 43rd | OF Kenny Lofton Cle |
| 5 | 54th | P Mark Wohlers Atl |
| 6 | 67th | P John Smoltz Atl |
| 7 | 78th | P Ismael Valdez LA |
| 8 | 91st | P Jeff Fassero Sea |
| 9 | 102nd | 2B Ray Durham ChA |
| 10 | 115th | OF Brian Jordan StL |
| 11 | 126th | P Andy Ashby SD |
| 12 | 139th | C Mike Lieberthal Phi |
| 13 | 150th | 1B Fred McGriff TB |
| 14 | 163rd | OF Geronimo Berroa Cle |
| 15 | 174th | OF Bernard Gilkey NYN |
| 16 | 187th | 1B Eric Karros LA |
| 17 | 198th | P Matt Karchner ChA |
| 18 | 211th | C Todd Hundley NYN |
| 19 | 222nd | SS Shawon Dunston Cle |
| 20 | 235th | P Chad Ogea Cle |
| 21 | 246th | OF Glenallen Hill Sea |
| 22 | 259th | SS Pat Meares Min |
| 23 | 270th | 3B Shane Andrews Mon |
| 24 | 283rd | OF Brian McRae NYN |
| 25 | 294th | P Steve Trachsel ChN |
| 26 | 307th | P Mark Langston SD |
| 27 | 318th | P Kevin Appier KC |