| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Mo Vaughn Bos |
| 2 | 14th | 3B Chipper Jones Atl |
| 3 | 35th | OF Ray Lankford StL |
| 4 | 38th | OF Manny Ramirez Cle |
| 5 | 59th | P Antonio Osuna LA |
| 6 | 62nd | C Javy Lopez Atl |
| 7 | 83rd | OF Ben Grieve Oak |
| 8 | 86th | P Brad Radke Min |
| 9 | 107th | OF Jeromy Burnitz Mil |
| 10 | 110th | 1B Paul Konerko LA |
| 11 | 131st | SS Omar Vizquel Cle |
| 12 | 134th | P Hideo Nomo LA |
| 13 | 155th | OF Vladimir Guerrero Mon |
| 14 | 158th | P Todd Stottlemyre StL |
| 15 | 179th | P John Rocker Atl |
| 16 | 182nd | P Mark Clark ChN |
| 17 | 203rd | P Brett Tomko Cin |
| 18 | 206th | C Chris Widger Mon |
| 19 | 227th | 3B Sean Berry Hou |
| 20 | 230th | 2B Scott Spiezio Oak |
| 21 | 251st | P Mark Gardner SF |
| 22 | 254th | 1B Kevin Young Pit |
| 23 | 275th | P Allen Watson Ana |
| 24 | 278th | P Garrett Stephenson Phi |
| 25 | 299th | P Manny Aybar StL |
| 26 | 302nd | OF Richard Hidalgo Hou |
| 27 | 323rd | P Jason Schmidt Pit |