| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SS Nomar Garciaparra Bos |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | 3B Scott Rolen Phi |
| 4 | 37th | P Mariano Rivera NYA |
| 5 | 60th | P Robb Nen SF |
| 6 | 61st | P Curt Schilling Phi |
| 7 | 84th | P Pat Hentgen Tor |
| 8 | 85th | P Tom Glavine Atl |
| 9 | 108th | 1B J.T. Snow SF |
| 10 | 109th | 1B Darin Erstad Ana |
| 11 | 132nd | OF Rondell White Mon |
| 12 | 133rd | OF Derek Bell Hou |
| 13 | 156th | 1B John Jaha Mil |
| 14 | 157th | OF Brian L. Hunter Det |
| 15 | 180th | C Chris Hoiles Bal |
| 16 | 181st | OF Al Martin Pit |
| 17 | 204th | P Orel Hershiser SF |
| 18 | 205th | P Willie Blair Ari |
| 19 | 228th | 3B Joe Randa Det |
| 20 | 229th | 2B Joey Cora Sea |
| 21 | 252nd | OF Luis Gonzalez Det |
| 22 | 253rd | P Heathcliff Slocumb Sea |
| 23 | 276th | C John Flaherty TB |
| 24 | 277th | DH Jose Canseco Tor |
| 25 | 300th | P Jason Bere ChA |
| 26 | 301st | P Lesli Brea Bal |
| 27 | 324th | P James Baldwin ChA |