| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Barry Bonds SF |
| 2 | 18th | 1B Jim Thome Cle |
| 3 | 31st | OF Tim Salmon Ana |
| 4 | 42nd | OF Rusty Greer Tex |
| 5 | 55th | P John Wetteland Tex |
| 6 | 66th | P Ricky Bottalico Phi |
| 7 | 79th | OF Jim Edmonds Ana |
| 8 | 90th | P Armando Benitez Bal |
| 9 | 103rd | 3B Russ Davis Sea |
| 10 | 114th | 2B Damion Easley Det |
| 11 | 127th | SS Jay Bell Ari |
| 12 | 138th | C Terry Steinbach Min |
| 13 | 151st | P Jeff Brantley StL |
| 14 | 162nd | P David Wells NYA |
| 15 | 175th | P Bobby J. Jones NYN |
| 16 | 186th | P Hideki Irabu NYA |
| 17 | 199th | P Pedro Astacio Col |
| 18 | 210th | P Geremi Gonzalez ChN |
| 19 | 223rd | P Jaime Navarro ChA |
| 20 | 234th | P Tim Belcher KC |
| 21 | 247th | P Victor Santos Det |
| 22 | 258th | 3B Kevin Orie ChN |
| 23 | 271st | OF B.J. Surhoff Bal |
| 24 | 282nd | 1B Rico Brogna Phi |
| 25 | 295th | P Tony Saunders TB |
| 26 | 306th | P Brian Fuentes Sea |
| 27 | 319th | P Jeff Suppan Ari |