| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Mo Vaughn Bos |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | 3B Scott Rolen Phi |
| 4 | 37th | P Curt Schilling Phi |
| 5 | 60th | OF David Justice Cle |
| 6 | 61st | OF Jose Cruz Jr Tor |
| 7 | 84th | SS Royce Clayton StL |
| 8 | 85th | P Justin Thompson Det |
| 9 | 108th | OF Vladimir Guerrero Mon |
| 10 | 109th | P Matt Morris StL |
| 11 | 132nd | C Jason Kendall Pit |
| 12 | 133rd | OF Andruw Jones Atl |
| 13 | 156th | 1B Eric Karros LA |
| 14 | 157th | OF Garret Anderson Ana |
| 15 | 180th | P Kirk Rueter SF |
| 16 | 181st | P Andy Ashby SD |
| 17 | 204th | 3B Dave Hollins Ana |
| 18 | 205th | 1B Kevin Young Pit |
| 19 | 228th | P Matt Karchner ChA |
| 20 | 229th | P Ugueth Urbina Mon |
| 21 | 252nd | 2B Scott Spiezio Oak |
| 22 | 253rd | SS Jose Vizcaino LA |
| 23 | 276th | P Scott Kamieniecki Bal |
| 24 | 277th | P Jaime Navarro ChA |
| 25 | 300th | P Kerry Wood ChN |
| 26 | 301st | C Jorge Fabregas Ari |
| 27 | 324th | OF Gregg Jefferies Phi |