| Round | Overall | Player |
|---|---|---|
| 1 | 5th | C Mike Piazza LA |
| 2 | 20th | 3B Chipper Jones Atl |
| 3 | 29th | OF Tim Salmon Ana |
| 4 | 44th | 1B Tino Martinez NYA |
| 5 | 53rd | P Andy Pettitte NYA |
| 6 | 68th | P Randy Myers Tor |
| 7 | 77th | P Darryl Kile Col |
| 8 | 92nd | SS Jeff Blauser ChN |
| 9 | 101st | P Jimmy Key Bal |
| 10 | 116th | DH Chili Davis NYA |
| 11 | 125th | OF Jeromy Burnitz Mil |
| 12 | 140th | 2B Tony Womack Pit |
| 13 | 149th | OF Bernard Gilkey NYN |
| 14 | 164th | P David Wells NYA |
| 15 | 173rd | 1B J.T. Snow SF |
| 16 | 188th | P Tim Wakefield Bos |
| 17 | 197th | 3B Cal Ripken Bal |
| 18 | 212th | DH Joe Carter Bal |
| 19 | 221st | OF B.J. Surhoff Bal |
| 20 | 236th | P Mark Clark ChN |
| 21 | 245th | OF Troy O'Leary Bos |
| 22 | 260th | 2B Mickey Morandini ChN |
| 23 | 269th | P Heathcliff Slocumb Sea |
| 24 | 284th | P Aaron Sele Tex |
| 25 | 293rd | OF Matt Lawton Min |
| 26 | 308th | SS Walt Weiss Atl |
| 27 | 317th | C Brad Ausmus Hou |