| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | 2B Roberto Alomar Bal |
| 3 | 25th | SS Derek Jeter NYA |
| 4 | 48th | OF Bob Higginson Det |
| 5 | 49th | 3B Travis Fryman Cle |
| 6 | 72nd | OF Todd Helton Col |
| 7 | 73rd | P Todd Stottlemyre StL |
| 8 | 96th | 1B Darin Erstad Ana |
| 9 | 97th | P Shane Reynolds Hou |
| 10 | 120th | P Brad Radke Min |
| 11 | 121st | OF Butch Huskey NYN |
| 12 | 144th | P Carlos Perez Mon |
| 13 | 145th | 1B Paul Konerko LA |
| 14 | 168th | P Dave Burba Cle |
| 15 | 169th | P Darren Dreifort LA |
| 16 | 192nd | C Chris Widger Mon |
| 17 | 193rd | OF Magglio Ordonez ChA |
| 18 | 216th | SS Jose Valentin Mil |
| 19 | 217th | 3B Kevin Orie ChN |
| 20 | 240th | C Mike Sweeney KC |
| 21 | 241st | P Jeff Montgomery KC |
| 22 | 264th | OF Shannon Stewart Tor |
| 23 | 265th | DH Jose Canseco Tor |
| 24 | 288th | 2B Bret Boone Cin |
| 25 | 289th | P Kenny Rogers Oak |
| 26 | 312th | P Lesli Brea Bal |
| 27 | 313th | OF Glenallen Hill Sea |