| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Barry Bonds SF |
| 2 | 18th | 1B Andres Galarraga Atl |
| 3 | 31st | OF Dante Bichette Col |
| 4 | 42nd | 3B Matt Williams Ari |
| 5 | 55th | P Denny Neagle Atl |
| 6 | 66th | SS Jay Bell Ari |
| 7 | 79th | OF Paul O'Neill NYA |
| 8 | 90th | OF Rusty Greer Tex |
| 9 | 103rd | P Scott Erickson Bal |
| 10 | 114th | P Todd Jones Det |
| 11 | 127th | P Jamie Moyer Sea |
| 12 | 138th | P Andy Benes Ari |
| 13 | 151st | OF Henry Rodriguez ChN |
| 14 | 162nd | P Al Leiter NYN |
| 15 | 175th | OF Jason Giambi Oak |
| 16 | 186th | C Chris Hoiles Bal |
| 17 | 199th | 1B Travis Lee Ari |
| 18 | 210th | 1B Mark Grace ChN |
| 19 | 223rd | SS Shawon Dunston Cle |
| 20 | 234th | C Jorge Posada NYA |
| 21 | 247th | 3B Bobby Bonilla Fla |
| 22 | 258th | P Bob Tewksbury Min |
| 23 | 271st | P Tom Candiotti Oak |
| 24 | 282nd | P Brian Moehler Det |
| 25 | 295th | P Tim Worrell Det |
| 26 | 306th | 3B Gary Gaetti StL |
| 27 | 319th | P Brian Anderson Ari |