| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jeff Bagwell Hou |
| 2 | 17th | P Pedro Martinez Bos |
| 3 | 32nd | P Roger Clemens Tor |
| 4 | 41st | P Randy Johnson Sea |
| 5 | 56th | OF Brady Anderson Bal |
| 6 | 65th | SS Barry Larkin Cin |
| 7 | 80th | OF Steve Finley SD |
| 8 | 89th | OF Moises Alou Hou |
| 9 | 104th | C Todd Greene Ana |
| 10 | 113th | 2B Eric Young LA |
| 11 | 128th | 1B John Jaha Mil |
| 12 | 137th | 3B Willie Greene Cin |
| 13 | 152nd | OF Brian Jordan StL |
| 14 | 161st | P Rick Reed NYN |
| 15 | 176th | C Darrin Fletcher Tor |
| 16 | 185th | SS Alex Gonzalez Tor |
| 17 | 200th | OF Eric Davis Bal |
| 18 | 209th | P John Franco NYN |
| 19 | 224th | 3B Fernando Tatis Tex |
| 20 | 233rd | P Pete Harnisch Cin |
| 21 | 248th | 2B Craig Counsell Fla |
| 22 | 257th | P Chris Holt Hou |
| 23 | 272nd | OF Cliff Floyd Fla |
| 24 | 281st | 1B Hal Morris KC |
| 25 | 296th | P Jay Powell Fla |
| 26 | 305th | 3B Scott Brosius NYA |
| 27 | 320th | P Tim Belcher KC |