| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Albert Belle Bal |
| 2 | 14th | C Ivan Rodriguez Tex |
| 3 | 35th | P Pedro Martinez Bos |
| 4 | 38th | 2B Roberto Alomar Cle |
| 5 | 59th | P Tom Gordon Bos |
| 6 | 62nd | OF Ray Lankford StL |
| 7 | 83rd | P Chan Ho Park LA |
| 8 | 86th | P John Wetteland Tex |
| 9 | 107th | P Roberto Hernandez TB |
| 10 | 110th | 3B Eric Chavez Oak |
| 11 | 131st | DH Jose Canseco TB |
| 12 | 134th | P John Franco NYN |
| 13 | 155th | 1B Mark Grace ChN |
| 14 | 158th | P Kenny Rogers Oak |
| 15 | 179th | SS Mike Caruso ChA |
| 16 | 182nd | OF Tony Gwynn SD |
| 17 | 203rd | 3B Fernando Tatis StL |
| 18 | 206th | 1B Jeff King KC |
| 19 | 227th | P Matt Clement SD |
| 20 | 230th | OF Mark Kotsay Fla |
| 21 | 251st | P Steve Woodard Mil |
| 22 | 254th | SS Alex Gonzalez Tor |
| 23 | 275th | OF Mike Cameron Cin |
| 24 | 278th | C A.J. Hinch Oak |
| 25 | 299th | 1B Sean Casey Cin |
| 26 | 302nd | OF Carl Everett Hou |
| 27 | 323rd | P Roy Halladay Tor |