| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Derek Jeter NYA |
| 2 | 14th | 2B Edgardo Alfonzo NYN |
| 3 | 35th | RP Billy Wagner Hou |
| 4 | 38th | SP Kevin Millwood Atl |
| 5 | 59th | 1B Jason Giambi Oak |
| 6 | 62nd | OF Andruw Jones Atl |
| 7 | 83rd | OF Bobby Abreu Phi |
| 8 | 86th | OF Raul Mondesi Tor |
| 9 | 107th | SP Aaron Sele Sea |
| 10 | 110th | C Jason Varitek Bos |
| 11 | 131st | SP Chan Ho Park LA |
| 12 | 134th | OF Luis Gonzalez Ari |
| 13 | 155th | SP Jon Lieber ChN |
| 14 | 158th | 1B Mark Grace ChN |
| 15 | 179th | SP Ismael Valdez ChN |
| 16 | 182nd | 3B Travis Fryman Cle |
| 17 | 203rd | OF Jim Edmonds StL |
| 18 | 206th | 3B Eric Chavez Oak |
| 19 | 227th | RP Bob Howry ChA |
| 20 | 230th | 2B Damion Easley Det |
| 21 | 251st | SP Jaret Wright Cle |
| 22 | 254th | SS Jose Hernandez Mil |
| 23 | 275th | C John Flaherty TB |
| 24 | 278th | SP Juan Guzman TB |
| 25 | 299th | RP Bob Wickman Mil |
| 26 | 302nd | 3B Todd Zeile NYN |
| 27 | 323rd | SP John Halama Sea |