| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Cin |
| 2 | 23rd | C Jason Kendall Pit |
| 3 | 26th | RP Mariano Rivera NYA |
| 4 | 47th | 1B Jim Thome Cle |
| 5 | 50th | SP Andy Ashby Phi |
| 6 | 71st | OF Jeromy Burnitz Mil |
| 7 | 74th | SS Miguel Tejada Oak |
| 8 | 95th | SP Russ Ortiz SF |
| 9 | 98th | RP Derek Lowe Bos |
| 10 | 119th | SP Kevin Appier Oak |
| 11 | 122nd | SP Andy Pettitte NYA |
| 12 | 143rd | 3B Ken Caminiti Hou |
| 13 | 146th | OF J.D. Drew StL |
| 14 | 167th | SP Matt Clement SD |
| 15 | 170th | 2B Jose Offerman Bos |
| 16 | 191st | SP Livan Hernandez SF |
| 17 | 194th | SP Chris Carpenter Tor |
| 18 | 215th | OF Paul O'Neill NYA |
| 19 | 218th | OF Bob Higginson Det |
| 20 | 239th | SP Brian Moehler Det |
| 21 | 242nd | C Chris Widger Mon |
| 22 | 263rd | 3B Corey Koskie Min |
| 23 | 266th | OF Geoff Jenkins Mil |
| 24 | 287th | SP Kevin Tapani ChN |
| 25 | 290th | SP Pat Rapp Bal |
| 26 | 311th | 1B Ryan Klesko SD |
| 27 | 314th | SP Kent Mercker Ana |