| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | 1B Rafael Palmeiro Tex |
| 3 | 25th | 3B Jeff Cirillo Col |
| 4 | 48th | SP Chuck Finley Cle |
| 5 | 49th | C Mike Lieberthal Phi |
| 6 | 72nd | RP Billy Koch Tor |
| 7 | 73rd | SP Al Leiter NYN |
| 8 | 96th | OF Johnny Damon KC |
| 9 | 97th | OF Ben Grieve Oak |
| 10 | 120th | SP Kenny Rogers Tex |
| 11 | 121st | SP Jose Rosado KC |
| 12 | 144th | 2B Quilvio Veras Atl |
| 13 | 145th | OF Brian Jordan Atl |
| 14 | 168th | SP Andy Benes StL |
| 15 | 169th | SP Kerry Wood ChN |
| 16 | 192nd | SP Omar Olivares Oak |
| 17 | 193rd | 1B Erubiel Durazo Ari |
| 18 | 216th | OF Doug Glanville Phi |
| 19 | 217th | RP Mike Timlin Bal |
| 20 | 240th | RP Ron Villone Cin |
| 21 | 241st | 3B Aaron Boone Cin |
| 22 | 264th | SP Wilson Alvarez TB |
| 23 | 265th | SP Esteban Loaiza Tex |
| 24 | 288th | C Ben Molina Ana |
| 25 | 289th | RP Danny Graves Cin |
| 26 | 312th | OF Jose Cruz Jr Tor |
| 27 | 313th | RP Matt Anderson Det |