| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Jeff Bagwell Hou |
| 2 | 22nd | OF Juan Gonzalez Det |
| 3 | 27th | OF Shawn Green LA |
| 4 | 46th | SP Orlando Hernandez NYA |
| 5 | 51st | 3B Fernando Tatis StL |
| 6 | 70th | RP John Rocker Atl |
| 7 | 75th | RP Armando Benitez NYN |
| 8 | 94th | SP Curt Schilling Phi |
| 9 | 99th | 2B Jay Bell Ari |
| 10 | 118th | RP Dave Veres StL |
| 11 | 123rd | SP Pete Harnisch Cin |
| 12 | 142nd | OF Matt Stairs Oak |
| 13 | 147th | SP Jason Schmidt Pit |
| 14 | 166th | 1B Mike Sweeney KC |
| 15 | 171st | SP Dave Burba Cle |
| 16 | 190th | SP Gil Heredia Oak |
| 17 | 195th | SP Darren Oliver Tex |
| 18 | 214th | SS Royce Clayton Tex |
| 19 | 219th | SP Alex Fernandez Fla |
| 20 | 238th | OF Mike Cameron Sea |
| 21 | 243rd | 2B Bret Boone SD |
| 22 | 262nd | 1B Fred McGriff TB |
| 23 | 267th | SP Carl Pavano Mon |
| 24 | 286th | C Ramon Hernandez Oak |
| 25 | 291st | 1B Pat Burrell Phi |
| 26 | 310th | C Damian Miller Ari |
| 27 | 315th | SP Kip Wells ChA |