| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Nomar Garciaparra Bos |
| 2 | 23rd | RP Mariano Rivera NYA |
| 3 | 26th | SP Randy Johnson Ari |
| 4 | 47th | OF Jeromy Burnitz Mil |
| 5 | 50th | C Mike Lieberthal Phi |
| 6 | 71st | 2B Jay Bell Ari |
| 7 | 74th | SP Mike Hampton NYN |
| 8 | 95th | 1B John Olerud Sea |
| 9 | 98th | SP Tom Glavine Atl |
| 10 | 119th | DH Edgar Martinez Sea |
| 11 | 122nd | OF Brady Anderson Bal |
| 12 | 143rd | 3B Ken Caminiti Hou |
| 13 | 146th | RP Rick Aguilera ChN |
| 14 | 167th | OF Kenny Lofton Cle |
| 15 | 170th | SP Pete Harnisch Cin |
| 16 | 191st | OF Paul O'Neill NYA |
| 17 | 194th | SP Charles Nagy Cle |
| 18 | 215th | SP Juan Guzman TB |
| 19 | 218th | SP Andy Benes StL |
| 20 | 239th | OF Rickey Henderson NYN |
| 21 | 242nd | 3B John Valentin Bos |
| 22 | 263rd | C Ramon Hernandez Oak |
| 23 | 266th | RP Mike Williams Pit |
| 24 | 287th | 1B J.T. Snow SF |
| 25 | 290th | SP Eric Gagne LA |
| 26 | 311th | SP Dave Mlicki Det |
| 27 | 314th | SP Mark Mulder Oak |