| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Jeff Bagwell Hou |
| 2 | 20th | C Jason Kendall Pit |
| 3 | 29th | 3B Jeff Cirillo Col |
| 4 | 44th | OF Bobby Abreu Phi |
| 5 | 53rd | 2B Chuck Knoblauch NYA |
| 6 | 68th | SS Omar Vizquel Cle |
| 7 | 77th | OF Johnny Damon KC |
| 8 | 92nd | SP Roger Clemens NYA |
| 9 | 101st | SP Shane Reynolds Hou |
| 10 | 116th | SP Andy Pettitte NYA |
| 11 | 125th | SP Rick Ankiel StL |
| 12 | 140th | OF Jermaine Dye KC |
| 13 | 149th | 1B Paul Konerko ChA |
| 14 | 164th | SP Ramon Martinez Bos |
| 15 | 173rd | SP Kenny Rogers Tex |
| 16 | 188th | DH Robert Fick Det |
| 17 | 197th | 2B Carlos Febles KC |
| 18 | 212th | SP Ryan Rupe TB |
| 19 | 221st | SP Kip Wells ChA |
| 20 | 236th | OF Tom Goodwin Col |
| 21 | 245th | SP Chris Holt Hou |
| 22 | 260th | SP Ed Yarnall NYA |
| 23 | 269th | C Mitch Meluskey Hou |
| 24 | 284th | RP Kazuhiro Sasaki Sea |
| 25 | 293rd | OF Ricky Ledee NYA |
| 26 | 308th | OF Todd Hollandsworth LA |
| 27 | 317th | OF Bernard Gilkey Ari |