| Round | Overall | Player |
|---|---|---|
| 1 | 10th | C Ivan Rodriguez Tex |
| 2 | 15th | OF Vladimir Guerrero Mon |
| 3 | 34th | OF Brian S. Giles Pit |
| 4 | 39th | RP Ugueth Urbina Mon |
| 5 | 58th | OF Andruw Jones Atl |
| 6 | 63rd | OF Carl Everett Bos |
| 7 | 82nd | RP Dave Veres StL |
| 8 | 87th | RP Derek Lowe Bos |
| 9 | 106th | 1B Erubiel Durazo Ari |
| 10 | 111th | SP Aaron Sele Sea |
| 11 | 130th | SP Eric Milton Min |
| 12 | 135th | SP Todd Ritchie Pit |
| 13 | 154th | SP Pedro Astacio Col |
| 14 | 159th | SP Francisco Cordova Pit |
| 15 | 178th | SP Jon Lieber ChN |
| 16 | 183rd | SS Neifi Perez Col |
| 17 | 202nd | SP Sterling Hitchcock SD |
| 18 | 207th | SP Steve Woodard Mil |
| 19 | 226th | 3B Corey Koskie Min |
| 20 | 231st | 1B Mark Grace ChN |
| 21 | 250th | 2B Eric Young ChN |
| 22 | 255th | SP Darren Oliver Tex |
| 23 | 274th | SP Gil Meche Sea |
| 24 | 279th | 3B Mike Lowell Fla |
| 25 | 298th | OF Matt Lawton Min |
| 26 | 303rd | SP Vladimir Nunez Fla |
| 27 | 322nd | C Bobby Estalella SF |