| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SS Nomar Garciaparra Bos |
| 2 | 21st | OF Juan Gonzalez Det |
| 3 | 28th | 2B Craig Biggio Hou |
| 4 | 45th | OF Bernie Williams NYA |
| 5 | 52nd | RP Jeff Shaw LA |
| 6 | 69th | OF Andruw Jones Atl |
| 7 | 76th | RP Troy Percival Ana |
| 8 | 93rd | SP Brad Radke Min |
| 9 | 100th | 1B Tino Martinez NYA |
| 10 | 117th | OF Jeffrey Hammonds Col |
| 11 | 124th | 3B Troy Glaus Ana |
| 12 | 141st | SP Russ Ortiz SF |
| 13 | 148th | 3B Eric Chavez Oak |
| 14 | 165th | SP Octavio Dotel Hou |
| 15 | 172nd | OF Jim Edmonds StL |
| 16 | 189th | 1B Erubiel Durazo Ari |
| 17 | 196th | RP Danny Graves Cin |
| 18 | 213th | SS Alex Gonzalez Fla |
| 19 | 220th | C Charles Johnson Bal |
| 20 | 237th | SP Juan Guzman TB |
| 21 | 244th | 2B Fernando Vina StL |
| 22 | 261st | SP Omar Olivares Oak |
| 23 | 268th | OF Bob Higginson Det |
| 24 | 285th | RP Ramiro Mendoza NYA |
| 25 | 292nd | C Ramon Castro Fla |
| 26 | 309th | SP Hideo Nomo Det |
| 27 | 316th | 3B Corey Koskie Min |