| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Derek Jeter NYA |
| 2 | 22nd | 3B Fernando Tatis StL |
| 3 | 27th | SP Kevin Millwood Atl |
| 4 | 46th | 1B Jim Thome Cle |
| 5 | 51st | C Javy Lopez Atl |
| 6 | 70th | OF Carl Everett Bos |
| 7 | 75th | RP John Rocker Atl |
| 8 | 94th | OF Doug Glanville Phi |
| 9 | 99th | 2B Jose Offerman Bos |
| 10 | 118th | RP Mike Jackson Phi |
| 11 | 123rd | SP Denny Neagle Cin |
| 12 | 142nd | 1B John Olerud Sea |
| 13 | 147th | OF Mike Cameron Sea |
| 14 | 166th | RP Mike Timlin Bal |
| 15 | 171st | OF Reggie Sanders Atl |
| 16 | 190th | DH John Jaha Oak |
| 17 | 195th | 2B Quilvio Veras Atl |
| 18 | 214th | SP Jeff Suppan KC |
| 19 | 219th | C Einar Diaz Cle |
| 20 | 238th | SP Sidney Ponson Bal |
| 21 | 243rd | RP Jason Isringhausen Oak |
| 22 | 262nd | 3B John Valentin Bos |
| 23 | 267th | SS Alex Gonzalez Tor |
| 24 | 286th | SP Javier Vazquez Mon |
| 25 | 291st | OF Tom Goodwin Col |
| 26 | 310th | RP C.J. Nitkowski Det |
| 27 | 315th | SP Armando Reynoso Ari |