| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Cin |
| 2 | 23rd | 3B Scott Rolen Phi |
| 3 | 26th | 2B Edgardo Alfonzo NYN |
| 4 | 47th | C Mike Lieberthal Phi |
| 5 | 50th | OF Greg Vaughn TB |
| 6 | 71st | 1B Eric Karros LA |
| 7 | 74th | RP Billy Koch Tor |
| 8 | 95th | SP Curt Schilling Phi |
| 9 | 98th | SP Ramon Martinez Bos |
| 10 | 119th | SS Mark Grudzielanek LA |
| 11 | 122nd | 1B Andres Galarraga Atl |
| 12 | 143rd | RP Todd Jones Det |
| 13 | 146th | SP Ismael Valdez ChN |
| 14 | 167th | OF Rondell White Mon |
| 15 | 170th | SP Rick Ankiel StL |
| 16 | 191st | 1B Mike Sweeney KC |
| 17 | 194th | RP Bob Wickman Mil |
| 18 | 215th | 3B Shane Andrews ChN |
| 19 | 218th | C Mitch Meluskey Hou |
| 20 | 239th | OF Henry Rodriguez ChN |
| 21 | 242nd | 2B Delino DeShields Bal |
| 22 | 263rd | SP Jaret Wright Cle |
| 23 | 266th | OF Preston Wilson Fla |
| 24 | 287th | C Joe Girardi ChN |
| 25 | 290th | SP Shawn Estes SF |
| 26 | 311th | 3B Michael Barrett Mon |
| 27 | 314th | SP Eric Gagne LA |