| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Mike Piazza NYN |
| 2 | 16th | OF Albert Belle Bal |
| 3 | 33rd | RP Billy Wagner Hou |
| 4 | 40th | 1B Mo Vaughn Ana |
| 5 | 57th | 2B Jeff Kent SF |
| 6 | 64th | SP Roger Clemens NYA |
| 7 | 81st | 3B Vinny Castilla TB |
| 8 | 88th | RP Dave Veres StL |
| 9 | 105th | OF Jeromy Burnitz Mil |
| 10 | 112th | SP Jamie Moyer Sea |
| 11 | 129th | RP Paul Shuey Cle |
| 12 | 136th | SP Dustin Hermanson Mon |
| 13 | 153rd | DH Edgar Martinez Sea |
| 14 | 160th | SS Miguel Tejada Oak |
| 15 | 177th | OF Jay Buhner Sea |
| 16 | 184th | OF Rusty Greer Tex |
| 17 | 201st | 1B Ryan Klesko SD |
| 18 | 208th | 3B Ken Caminiti Hou |
| 19 | 225th | SP Sterling Hitchcock SD |
| 20 | 232nd | SP Darryl Kile StL |
| 21 | 249th | SP Scott Erickson Bal |
| 22 | 256th | C John Flaherty TB |
| 23 | 273rd | SP Gil Heredia Oak |
| 24 | 280th | OF Gabe Kapler Tex |
| 25 | 297th | OF Derek Bell NYN |
| 26 | 304th | SS Pat Meares Pit |
| 27 | 321st | 1B Brad Fullmer Tor |