| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Mark McGwire StL |
| 2 | 18th | OF Vladimir Guerrero Mon |
| 3 | 31st | 1B Rafael Palmeiro Tex |
| 4 | 42nd | RP Ugueth Urbina Mon |
| 5 | 55th | OF Raul Mondesi Tor |
| 6 | 66th | 3B Robin Ventura NYN |
| 7 | 79th | OF Carlos Beltran KC |
| 8 | 90th | SP Tom Glavine Atl |
| 9 | 103rd | SS Neifi Perez Col |
| 10 | 114th | C Eddie Taubensee Cin |
| 11 | 127th | RP Bob Howry ChA |
| 12 | 138th | SP Justin Thompson Tex |
| 13 | 151st | SP Kevin Appier Oak |
| 14 | 162nd | OF Geoff Jenkins Mil |
| 15 | 175th | SP Kris Benson Pit |
| 16 | 186th | SP Jose Rosado KC |
| 17 | 199th | OF Juan Encarnacion Det |
| 18 | 210th | 2B Damion Easley Det |
| 19 | 223rd | SP Todd Stottlemyre Ari |
| 20 | 234th | OF David Justice Cle |
| 21 | 247th | C Dan Wilson Sea |
| 22 | 258th | 3B Joe Randa KC |
| 23 | 271st | 1B Brian Daubach Bos |
| 24 | 282nd | RP Eddie Guardado Min |
| 25 | 295th | 3B Cal Ripken Bal |
| 26 | 306th | RP Orber Moreno KC |
| 27 | 319th | 2B Randy Velarde Oak |