| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Jeff Bagwell Hou |
| 2 | 15th | 2B Edgardo Alfonzo NYN |
| 3 | 34th | SP Kevin Millwood Atl |
| 4 | 39th | OF Carl Everett Bos |
| 5 | 58th | 1B Jason Giambi Oak |
| 6 | 63rd | RP John Rocker Atl |
| 7 | 82nd | SS Omar Vizquel Cle |
| 8 | 87th | RP Derek Lowe Bos |
| 9 | 106th | 1B Paul Konerko ChA |
| 10 | 111th | 3B Tony Batista Tor |
| 11 | 130th | OF Matt Stairs Oak |
| 12 | 135th | SP Russ Ortiz SF |
| 13 | 154th | C Darrin Fletcher Tor |
| 14 | 159th | RP Mike Timlin Bal |
| 15 | 178th | OF Cliff Floyd Fla |
| 16 | 183rd | SP Javier Vazquez Mon |
| 17 | 202nd | 2B Randy Velarde Oak |
| 18 | 207th | DH Robert Fick Det |
| 19 | 226th | C Ramon Hernandez Oak |
| 20 | 231st | OF Kenny Lofton Cle |
| 21 | 250th | SP Chris Holt Hou |
| 22 | 255th | SP Brian Anderson Ari |
| 23 | 274th | OF Trot Nixon Bos |
| 24 | 279th | SP Brad Penny Fla |
| 25 | 298th | SP Kirk Rueter SF |
| 26 | 303rd | 3B John Valentin Bos |
| 27 | 322nd | OF Marvin Benard SF |